{"uniprot":"A6NM43","gene":"CCT8L1P","name":"Putative T-complex protein 1 subunit theta-like 1","organism":"Homo sapiens (Human)","status":"dark","length":557,"sequence":"MDSTVPSALELPQRLALNPRESPRSPEEEEPHLLSSLAAVQTLANVIRPCYGPHGRQKFLVTMKGETVCTGCATAILRALELEHPAAWLLREAAQTQAENSGDGTAFVVLLTEALLEQAEQLLKFGLPRPQLREAYATATAEVLATLPSLAIQSLGPLEDPSWALHSVMNTHTLPPMNHLTKLVAHACWAIKELDGSFKPERVGVCTLHGGTLEDSCLLQGLAISGKLCGQMAAVLSGARVALFACPFGPAHPNAPATACLSSPADLAQFSKGSDQLLEKQVGQLAAAGINVAVVLGEVDEETLTLADKYGIVVIQARSRMEIIYLSEVLDTPLLPRLLPPQRPGKCQRVYRQELGDGLAVVFEWECTGTPALTVVLRGATTQGLRSAEQAVYHSIDAYFQPCQDPRLIPGAGATEMALAKMLSDKGSRLEGPNGPAFLAFARALKYLPKTLAENAGLAVSDVVAEMSGVHQGGNLLMGVGAEGIINVAQEGVWDTLIVKAQGFRAVAEVVLQLVTVDEIVVAKKSPTHQQIWNPDSKKTKKRPPPVEKKKILGMNN","function_summary":"A cytoplasmic subunit of the eukaryotic group II chaperonin complex that assembles with related subunits to form an ATP-driven folding cage. It uses nucleotide-powered conformational changes to fold cytoskeletal and regulatory clients, including actin, tubulin, and WRKY transcription factors, thereby sustaining proteostasis that feeds into cytoskeleton organization and transcriptional control. By stabilizing trafficking and cytoskeletal machinery, it indirectly influences Golgi-dependent cargo handling and pathways that can be exploited during toxin transport. It operates primarily in the cytoplasm, with functional enrichment at centrosomes and Golgi-associated assemblies.","plain_language":"CCT8L1P has barely been studied. The model's best guess: A cytoplasmic subunit of the eukaryotic group II chaperonin complex that assembles with related subunits to form an ATP-driven folding cage. It uses nucleotide-powered conformational changes to fold cytoskeletal and regulatory clients, including actin, tubulin, and WRKY transcription factors, thereby sustaining proteostasis that feeds into cytoskeleton organization and transcriptional control.","uniprot_summary":"Component of the chaperonin-containing T-complex (CCT), a complex that mediates the folding of proteins upon ATP hydrolysis. The CCT complex plays an essential role in the assembly of cytoskeletal proteins such as actin and tubulin, and the regulation of developmental processes. Involved in the folding of WRKY class B transcription factors.","go_terms":{"molecular_function":[{"id":"GO:0015269","label":"calcium-activated potassium channel activity"},{"id":"GO:0005253","label":"monoatomic anion channel activity"}],"biological_process":[{"id":"GO:1901998","label":"toxin transport"}],"cellular_component":[{"id":"GO:0005794","label":"Golgi apparatus"},{"id":"GO:0005813","label":"centrosome"}]},"interpro":[{"id":"IPR027413","name":"GroEL-like equatorial domain superfamily","type":"homologous_superfamily","start":28,"end":524},{"id":"IPR027410","name":"TCP-1-like chaperonin intermediate domain superfamily","type":"homologous_superfamily","start":153,"end":406},{"id":"IPR027409","name":"GroEL-like apical domain superfamily","type":"homologous_superfamily","start":220,"end":370},{"id":"IPR017998","name":"T-complex protein 1","type":"family","start":29,"end":524},{"id":"IPR002423","name":"Chaperonin Cpn60/GroEL/TCP-1 family","type":"family","start":43,"end":525}],"reasoning":"I begin with the InterPro architecture. The polypeptide is dominated by chaperonin-class signatures: IPR027413 (GroEL-like equatorial domain superfamily, residues 28–524) defines the ATPase-bearing equatorial base that powers conformational cycling; IPR027410 (TCP-1-like chaperonin intermediate domain superfamily, residues 153–406) provides the hinge that transmits nucleotide-state changes; and IPR027409 (GroEL-like apical domain superfamily, residues 220–370) forms the substrate-recognition lid. Two family-level assignments reinforce this identity: IPR017998 (T-complex protein 1 family, residues 29–524) and IPR002423 (Chaperonin Cpn60/GroEL/TCP-1 family, residues 43–525). The ordered equatorial–intermediate–apical layout is diagnostic of a group II chaperonin subunit that assembles into a hetero-oligomeric cage. This architecture causes ATP-driven folding cycles and obligate assembly with other CCT/TCP-1 subunits to form the cytosolic chaperonin complex.\n\nFrom this scaffold, the molecular function follows. The equatorial ATPase core and apical substrate-binding surface specify an ATP-dependent folding machine rather than a pore-forming transporter. Thus the primary molecular function is ATP-coupled chaperoning within the CCT system. The provided GO:0015269 calcium-activated potassium channel activity and GO:0005253 monoatomic anion channel activity describe ion-channel gating chemistries that typically arise from large pore-forming assemblies; however, the present sequence lacks transmembrane modules and instead encodes a soluble, oligomeric chaperonin. Therefore, the channel-like annotations are unlikely to be intrinsic activities of this polypeptide and instead suggest indirect coupling: by folding cytoskeletal and trafficking factors, this chaperonin can indirectly modulate pathways that influence toxin transport and membrane-associated ion fluxes.\n\nThe biological process is clarified by the chaperonin identity and trafficking connections. CCT/TCP-1 folds actin, tubulin, and numerous WRKY transcription factors, and it is required for the folding of WRKY class B proteins. This folding portfolio causally links to GO:1901998 toxin transport: many toxins exploit endocytic and secretory routes, and folding of cytoskeletal and trafficking components (e.g., tubulin, adaptors) determines the efficiency of toxin movement through vesicular and Golgi-associated pathways. By stabilizing these client proteins, the chaperonin indirectly governs cargo flow and can influence toxin handling.\n\nCellular localization is consistent with soluble cytosolic operation and specific subcellular niches. The absence of signal peptides and transmembrane segments supports a cytoplasmic residency, aligning with the stated cytoplasmic location. The GO cellular components further point to functional neighborhoods: GO:0005794 Golgi apparatus is compatible with CCT’s role in folding trafficking machinery that tunes Golgi-dependent cargo sorting; GO:0005813 centrosome is consistent with tubulin biogenesis and microtubule-organizing center needs. Together, these locations reflect a soluble complex that transiently concentrates at cytoskeleton- and trafficking-rich sites.\n\nMechanistically, I propose that this subunit assembles with other CCT/TCP-1 components to form an ATP-fueled double-ring cage. ATP binding and hydrolysis at the equatorial domains drive apical lid movements that encapsulate client proteins for productive folding. By folding actin and tubulin, and by supporting WRKY transcription factors, the complex indirectly shapes cytoskeletal dynamics, centrosome function, and Golgi-mediated transport routes that can be co-opted by toxins. Likely interaction partners therefore include other CCT/TCP-1 subunits and client proteins such as actin, tubulin, and WRKY factors, with transient contacts to Golgi and centrosomal assemblies that route intracellular cargo.","category":"dark","control_evaluation":null,"validation_plan":null,"structure":{"source":"AlphaFold DB","pdb":"/structures/AF-A6NM43.pdb","alphafold":"https://alphafold.ebi.ac.uk/entry/A6NM43"},"links":{"uniprot":"https://www.uniprot.org/uniprotkb/A6NM43/entry","atlas":"/p/A6NM43"},"provenance":{"model":"BioReason-Pro (ESM3 esm3-sm-open-v1)","source_list":"Pharos Tdark","note":"AI prediction, not experimentally verified"}}