{"uniprot":"Q7Z402","gene":"TMC7","name":"Transmembrane channel-like protein 7","organism":"Homo sapiens (Human)","status":"dark","length":723,"sequence":"MSESSGSALQPGRPSRQPAVHPENLSLDSSCFSSPPVNFLQELPSYRSIARRRTTVHSRDKQSGTLLKPTDSYSSQLEDRIAENLSSHSLRNYALNISEKRRLRDIQETQMKYLSEWDQWKRYSSKSWKRFLEKAREMTTHLELWREDIRSIEGKFGTGIQSYFSFLRFLVLLNLVIFLIIFMLVLLPVLLTKYKITNSSFVLIPFKDMDKQCTVYPVSSSGLIYFYSYIIDLLSGTGFLEETSLFYGHYTIDGVKFQNFTYDLPLAYLLSTIASLALSLLWIVKRSVEGFKINLIRSEEHFQSYCNKIFAGWDFCITNRSMADLKHSSLRYELRADLEEERMRQKIAERTSEETIRIYSLRLFLNCIVLAVLGACFYAIYVATVFSQEHMKKEIDKMVFGENLFILYLPSIVITLANFITPMIFAKIIRYEDYSPGFEIRLTILRCVFMRLATICVLVFTLGSKITSCDDDTCDLCGYNQKLYPCWETQVGQEMYKLMIFDFIIILAVTLFVDFPRKLLVTYCSSCKLIQCWGQQEFAIPDNVLGIVYGQTICWIGAFFSPLLPAIATLKFIIIFYVKEWSLLYTCRPSPRPFRASNSNFFFLLVLLIGLCLAIIPLTISISRIPSSKACGPFTNFNTTWEVIPKTVSTFPSSLQSFIHGVTSEAFAVPFFMIICLIMFYFIALAGAHKRVVIQLREQLSLESRDKCYLIQKLTEAQRDMRN","function_summary":"A human multi-pass membrane protein that assembles a TMC-family transmembrane core to form an oligomeric platform in intracellular membranes. By residing predominantly at the endoplasmic reticulum and Golgi apparatus and sampling the nuclear envelope, it binds partner proteins and modulates membrane-associated signaling and trafficking. This scaffolding and channel-like architecture is poised to restrain the supply or composition of membrane and determinants required for cilium formation, thereby dampening ciliogenesis and routing components through vesicular pathways that can yield extracellular vesicles.","plain_language":"TMC7 has barely been studied. The model's best guess: A human multi-pass membrane protein that assembles a TMC-family transmembrane core to form an oligomeric platform in intracellular membranes. By residing predominantly at the endoplasmic reticulum and Golgi apparatus and sampling the nuclear envelope, it binds partner proteins and modulates membrane-associated signaling and trafficking.","uniprot_summary":"May be involved in ciliogenesis.","go_terms":{"molecular_function":[{"id":"GO:0005515","label":"protein binding"}],"biological_process":[{"id":"GO:1902018","label":"negative regulation of cilium assembly"}],"cellular_component":[{"id":"GO:0005794","label":"Golgi apparatus"},{"id":"GO:0005783","label":"endoplasmic reticulum"},{"id":"GO:0070062","label":"extracellular exosome"},{"id":"GO:0031965","label":"nuclear membrane"}]},"interpro":[{"id":"IPR012496","name":"TMC domain","type":"domain","start":486,"end":597},{"id":"IPR038900","name":"Transmembrane channel-like protein","type":"family","start":50,"end":720}],"reasoning":"I begin with the InterPro architecture. The polypeptide carries IPR038900 (Transmembrane channel-like protein family) spanning residues 50–720, establishing membership in the TMC/TMCL superfamily that forms multi-pass membrane assemblies with ion-conduction or channel-like properties. Nested within this, IPR012496 (TMC domain) occupies residues 486–597, a hallmark transmembrane core that typically dictates pore formation and gating in TMC proteins. The ordered layout—an extensive TMC-family envelope with a centrally placed TMC domain—causes a multi-pass membrane topology that stabilizes oligomeric assemblies and creates a conduit for ion or signal transduction across membranes.\n\nThis architecture drives the molecular function. The TMC core favors oligomerization and macromolecular contacts, which supports GO:0005515 protein binding as an intrinsic property of the complex. While many TMCs are channel-like, this particular member’s extended cytosolic loops and luminal segments provide binding surfaces for trafficking and assembly factors. Thus, protein binding emerges as a primary functional readout of its modular scaffold.\n\nFrom molecular function, I infer the biological process. TMC-family assemblies at the endoplasmic reticulum and Golgi interface can modulate membrane curvature, cargo sorting, and ciliary membrane biogenesis. By constraining the supply or composition of membrane destined for the basal body and axoneme, this architecture enforces GO:1902018 negative regulation of cilium assembly. Mechanistically, dampening ciliogenesis can arise either by retaining TMC-family components in intracellular compartments or by altering ion fluxes that tune intraflagellar transport initiation.\n\nThe cellular component profile follows directly from the trafficking itinerary implied by the TMC scaffold. The presence of a multi-pass core predicts membrane residency and aligns with localization to GO:0005783 endoplasmic reticulum and GO:0005794 Golgi apparatus, where assembly and quality control of membrane proteins occur. Continuity between ER and nuclear envelope rationalizes detection at GO:0031965 nuclear membrane, consistent with ER-derived membranes encircling the nucleus. Sorting through endo-lysosomal pathways and vesicle biogenesis explains association with GO:0070062 extracellular exosome, reflecting packaging of membrane protein complexes into secreted vesicles.\n\nIntegrating these layers yields a mechanistic hypothesis. The TMC domain forms an oligomeric platform that binds partner proteins and tunes membrane-associated signaling. By residing predominantly in ER and Golgi membranes, the complex regulates the maturation and retention of ciliary determinants, thereby suppressing cilium assembly. It likely cycles through vesicular pathways and can be incorporated into exosomes. I hypothesize that it assembles with intraflagellar transport adaptors and ciliogenesis regulators at ER–Golgi contact sites, using protein-binding interfaces to sequester or delay ciliary cargo export. Candidate partners include ER/Golgi scaffolds and trafficking adaptors that together bias the cell away from ciliogenesis.","category":"dark","control_evaluation":null,"validation_plan":null,"structure":{"source":"AlphaFold DB","pdb":"/structures/AF-Q7Z402.pdb","alphafold":"https://alphafold.ebi.ac.uk/entry/Q7Z402"},"links":{"uniprot":"https://www.uniprot.org/uniprotkb/Q7Z402/entry","atlas":"/p/Q7Z402"},"provenance":{"model":"BioReason-Pro (ESM3 esm3-sm-open-v1)","source_list":"Pharos Tdark","note":"AI prediction, not experimentally verified"}}