{"uniprot":"Q8TDU5","gene":"VN1R17P","name":"Putative vomeronasal receptor-like protein 4","organism":"Homo sapiens (Human)","status":"dark","length":208,"sequence":"MEMTKLFSYIVIKNVYYPQVSFGISANTFLLLFHIFTFAYTHRLKPIDMTISHLPLIHILLLFTQAILVSSDLFESWNIQNNDLKCKIITFLNRVMRGVSICTTCLLSVLQAITISPSTSFLEKFKHISANHTLGFILFSWVLNMFITNNLLLFIVPTPNRIGASLLFVTEHCYVLPMSYTHRSLFFILMVLRDVIFIGLMVLSSGYG","function_summary":"A human cell-surface chemoreceptor that embeds a seven-helix transmembrane core to detect small extracellular cues and initiate heterotrimeric G protein signaling. By binding pheromone-like and bitter-related chemicals, it activates intracellular pathways that modulate ion channel activity and neuronal excitability within chemosensory circuits. Its multi-pass membrane architecture anchors it at the plasma membrane, where ligand binding triggers and tunes signaling cascades characteristic of vomeronasal-type receptors.","plain_language":"VN1R17P has barely been studied. The model's best guess: A human cell-surface chemoreceptor that embeds a seven-helix transmembrane core to detect small extracellular cues and initiate heterotrimeric G protein signaling. By binding pheromone-like and bitter-related chemicals, it activates intracellular pathways that modulate ion channel activity and neuronal excitability within chemosensory circuits.","uniprot_summary":"Putative pheromone receptor.","go_terms":{"molecular_function":[{"id":"GO:0005515","label":"protein binding"}],"biological_process":[{"id":"GO:0007186","label":"G protein-coupled receptor signaling pathway"},{"id":"GO:0050907","label":"detection of chemical stimulus involved in sensory perception"},{"id":"GO:0001580","label":"detection of chemical stimulus involved in sensory perception of bitter taste"}],"cellular_component":[{"id":"GO:0005886","label":"plasma membrane"}]},"interpro":[{"id":"IPR017452","name":"GPCR, rhodopsin-like, 7TM","type":"domain","start":26,"end":208},{"id":"IPR004072","name":"Vomeronasal receptor, type 1","type":"family","start":11,"end":207}],"reasoning":"I begin with the InterPro architecture. The core of the protein is IPR017452 (GPCR, rhodopsin-like, 7TM domain) spanning residues 26–208, a hallmark seven-transmembrane bundle that forms the ligand-binding pocket and the intracellular G protein–coupling interface of class A GPCRs. This rhodopsin-like scaffold is embedded within IPR004072 (Vomeronasal receptor, type 1 family) from residues 11–207, which specifies a chemosensory subclass of class A GPCRs specialized for pheromone and chemosignal detection. The ordered layout—an N- to C-terminal seven-helix transmembrane core fully encompassed by a vomeronasal receptor family signature—causally dictates a membrane-embedded receptor that binds small extracellular ligands and transduces signals via heterotrimeric G proteins.\n\nThis architecture enforces molecular function in two ways. First, the rhodopsin-like 7TM fold creates a hydrophobic ligand pocket and an intracellular coupling surface that recruits and binds signaling partners; this supports GO:0005515 protein binding as an intrinsic property of the receptor–G protein–arrestin cycle. Second, the conserved class A GPCR framework drives GO:0007186 G protein-coupled receptor signaling pathway by catalyzing GDP-GTP exchange on Gα subunits. In vomeronasal type-1 receptors, this typically biases toward Gi/o-family coupling, which modulates second messengers and ion channel activity.\n\nFrom function to process, chemosensory GPCR signaling in the vomeronasal system feeds directly into organismal chemosensation. The V1R family signature ties the receptor to pheromone and chemosignal detection, aligning with GO:0050907 detection of chemical stimulus involved in sensory perception. Cross-talk between vomeronasal and gustatory circuits, together with shared ligand chemistries and downstream Gi/o pathways, rationalizes participation in GO:0001580 detection of chemical stimulus involved in sensory perception of bitter taste—an axis where bitter-related cues and receptor pathways intersect.\n\nCellular location follows directly from the seven-helix transmembrane core and the need to sample extracellular ligands: the receptor must reside in the plasma membrane, consistent with GO:0005886 plasma membrane and the experimentally grounded description of a cell membrane, multi-pass membrane protein. The 7TM domain causes stable insertion into the lipid bilayer and provides the topological basis for signal transduction at the cell surface.\n\nMechanistically, I hypothesize that extracellular pheromone-like or bitter-related small molecules occupy the 7TM pocket, shifting the receptor to an active conformation that recruits Gi/o-family G proteins. This triggers second-messenger changes that open ion channels and produce neuronal depolarization in chemosensory neurons. Likely interaction partners include Gβγ-containing heterotrimers, GPCR kinases, and arrestins that terminate signaling and direct endocytosis. Accessory membrane proteins and trafficking chaperones may stabilize the receptor in the plasma membrane and tune its sensitivity. Together, these features define a plasma-membrane chemoreceptor that initiates GPCR signaling to drive chemosensory detection pathways.","category":"dark","control_evaluation":null,"validation_plan":null,"structure":{"source":"AlphaFold DB","pdb":"/structures/AF-Q8TDU5.pdb","alphafold":"https://alphafold.ebi.ac.uk/entry/Q8TDU5"},"links":{"uniprot":"https://www.uniprot.org/uniprotkb/Q8TDU5/entry","atlas":"/p/Q8TDU5"},"provenance":{"model":"BioReason-Pro (ESM3 esm3-sm-open-v1)","source_list":"Pharos Tdark","note":"AI prediction, not experimentally verified"}}