{"uniprot":"Q96JB8","gene":"MPP4","name":"MAGUK p55 subfamily member 4","organism":"Homo sapiens (Human)","status":"dark","length":637,"sequence":"MIQSDKGADPPDKKDMKLSTATNPQNGLSQILRLVLQELSLFYGRDVNGVCLLYDLLHSPWLQALLKIYDCLQEFKEKKLVPATPHAQVLSYEVVELLRETPTSPEIQELRQMLQAPHFKALLSAHDTIAQKDFEPLLPPLPDNIPESEEAMRIVCLVKNQQPLGATIKRHEMTGDILVARIIHGGLAERSGLLYAGDKLVEVNGVSVEGLDPEQVIHILAMSRGTIMFKVVPVSDPPVNSQQMVYVRAMTEYWPQEDPDIPCMDAGLPFQKGDILQIVDQNDALWWQARKISDPATCAGLVPSNHLLKRKQREFWWSQPYQPHTCLKSTLSISMEEEDDMKIDEKCVEADEETFESEELSEDKEEFVGYGQKFFIAGFRRSMRLCRRKSHLSPLHASVCCTGSCYSAVGAPYEEVVRYQRRPSDKYRLIVLMGPSGVGVNELRRQLIEFNPSHFQSAVPHTTRTKKSYEMNGREYHYVSKETFENLIYSHRMLEYGEYKGHLYGTSVDAVQTVLVEGKICVMDLEPQDIQGVRTHELKPYVIFIKPSNMRCMKQSRKNAKVITDYYVDMKFKDEDLQEMENLAQRMETQFGQFFDHVIVNDSLHDACAQLLSAIQKAQEEPQWVPATWISSDTESQ","function_summary":"A cytosolic MAGUK scaffold that assembles multiprotein complexes to position membrane and adhesion proteins at specialized cell–cell contacts and neuronal synapses. Its tandem L27 repeats nucleate higher-order assemblies, the PDZ module captures C-terminal motifs of channels and adhesion receptors, the SH3 module binds proline-rich partners, and the guanylate kinase-like core stabilizes the lattice rather than catalyzing nucleotide hydrolysis. By coupling membrane-proximal binding with cytoskeletal interfaces, it organizes junctional and synaptic domains and concentrates cargo in the cytosol near adherens junctions and the actin network.","plain_language":"MPP4 has barely been studied. The model's best guess: A cytosolic MAGUK scaffold that assembles multiprotein complexes to position membrane and adhesion proteins at specialized cell–cell contacts and neuronal synapses. Its tandem L27 repeats nucleate higher-order assemblies, the PDZ module captures C-terminal motifs of channels and adhesion receptors, the SH3 module binds proline-rich partners, and the guanylate kinase-like core stabilizes the lattice rather than catalyzing nucleotide hydrolysis.","uniprot_summary":"May be a component of a complex involved in the localization of membrane-associated proteins.","go_terms":{"molecular_function":[{"id":"GO:0005515","label":"protein binding"}],"biological_process":[{"id":"GO:0035418","label":"protein localization to synapse"}],"cellular_component":[{"id":"GO:0005829","label":"cytosol"},{"id":"GO:0032991","label":"protein-containing complex"},{"id":"GO:0005911","label":"cell-cell junction"},{"id":"GO:0005856","label":"cytoskeleton"},{"id":"GO:0005912","label":"adherens junction"}]},"interpro":[{"id":"IPR036892","name":"L27 domain superfamily","type":"homologous_superfamily","start":86,"end":136},{"id":"IPR036034","name":"PDZ superfamily","type":"homologous_superfamily","start":130,"end":236},{"id":"IPR036028","name":"SH3-like domain superfamily","type":"homologous_superfamily","start":219,"end":338},{"id":"IPR027417","name":"P-loop containing nucleoside triphosphate hydrolase","type":"homologous_superfamily","start":414,"end":631},{"id":"IPR004172","name":"L27 domain","type":"domain","start":24,"end":83},{"id":"IPR004172","name":"L27 domain","type":"domain","start":87,"end":140},{"id":"IPR014775","name":"L27 domain, C-terminal","type":"domain","start":90,"end":138},{"id":"IPR001478","name":"PDZ domain","type":"domain","start":154,"end":235},{"id":"IPR001452","name":"SH3 domain","type":"domain","start":242,"end":312},{"id":"IPR035600","name":"MPP4, SH3 domain","type":"domain","start":246,"end":306},{"id":"IPR008145","name":"Guanylate kinase/L-type calcium channel beta subunit","type":"domain","start":426,"end":619},{"id":"IPR008144","name":"Guanylate kinase-like domain","type":"domain","start":427,"end":616},{"id":"IPR050716","name":"Membrane-associated guanylate kinase, MPP/CASK","type":"family","start":20,"end":630},{"id":"IPR020590","name":"Guanylate kinase, conserved site","type":"conserved_site","start":462,"end":479}],"reasoning":"I begin by dissecting the domain architecture. The N-terminus carries an L27 module: IPR004172 (L27 domain, residues 24–83) followed by a second L27 block captured by IPR036892 (L27 domain superfamily, residues 86–136), IPR004172 (L27 domain, residues 87–140), and IPR014775 (L27 domain, C-terminal, residues 90–138). Tandem L27 repeats form obligate hetero-oligomeric scaffolds that nucleate supramolecular assemblies and anchor multiprotein complexes. Immediately downstream lies a PDZ module: IPR036034 (PDZ superfamily, residues 130–236) and IPR001478 (PDZ domain, residues 154–235). PDZ domains capture short C-terminal motifs of membrane-associated proteins and adhesion components, thereby docking channels, receptors, and junctional adaptors. The central region contains an SH3 module: IPR036028 (SH3-like domain superfamily, residues 219–338), IPR001452 (SH3 domain, residues 242–312), and the lineage-specific IPR035600 (MPP4, SH3 domain, residues 246–306). SH3 domains bind proline-rich motifs and often cooperate with PDZ modules to build higher-order assemblies. The C-terminal half is a guanylate kinase-like core: IPR027417 (P-loop containing nucleoside triphosphate hydrolase superfamily, residues 414–631), IPR008145 (Guanylate kinase/L-type calcium channel beta subunit, residues 426–619), IPR008144 (Guanylate kinase-like domain, residues 427–616), and IPR020590 (Guanylate kinase conserved site, residues 462–479). In MAGUKs, this “GUK” fold is catalytically repurposed as a rigid interaction hub rather than an active NTPase. The entire arrangement is unified by IPR050716 (Membrane-associated guanylate kinase, MPP/CASK family, residues 20–630), which defines a canonical MAGUK scaffold that assembles membrane-proximal signaling and adhesion complexes.\n\nThis ordered L27–PDZ–SH3–GUK architecture causes multivalent protein binding as the primary molecular function. The tandem L27 repeats seed oligomerization and membrane-proximal complex assembly; the PDZ domain captures C-terminal ligands of channels and adhesion proteins; the SH3 domain binds proline-rich partners; and the GUK-like core stabilizes higher-order assemblies. Together, these features enforce GO:0005515 protein binding as the operative molecular function.\n\nFrom this scaffolded binding capacity, the biological role emerges. MAGUK assemblies at cell–cell contacts and neuronal synapses direct where membrane proteins and cytoskeletal regulators accumulate. The PDZ and SH3 modules recruit adhesion and trafficking factors, while L27-driven oligomerization concentrates complexes at specialized membrane territories. This architecture drives the process formalized as GO:0035418 protein localization to synapse, by physically tethering synaptic cargoes and adhesion machinery and thereby enforcing synaptic domain organization.\n\nCellular placement follows directly from the scaffold’s binding logic and known assembly sites. The absence of transmembrane segments and the presence of soluble interaction modules indicate a cytosolic protein that peripherally associates with membranes and the cytoskeleton, aligning with GO:0005829 cytosol and GO:0005856 cytoskeleton. Its role in junctional assembly and adhesion predicts accumulation at GO:0005912 adherens junction, where MAGUK scaffolds coordinate cadherin–catenin complexes and associated trafficking hubs.\n\nMechanistically, I hypothesize that the L27 tandem nucleates a higher-order MAGUK lattice that seeds junctional and synaptic assemblies. The PDZ domain captures the C-termini of membrane receptors and channels; the SH3 domain binds proline-rich adaptors and actin regulators; and the GUK-like core locks the assembly into a stable platform. This platform likely interfaces with trafficking adaptors and cytoskeletal regulators to position cargo at synapses and adherens junctions. Likely partners include membrane-associated adhesion receptors and their adaptors (e.g., cadherin–catenin complexes), synaptic MAGUKs and L27-containing scaffolds (e.g., LIN7/Veli and CASK families), and actin-organizing factors that couple to junctional stability. These interactions collectively explain cytosolic solubility, peripheral membrane association, and cytoskeletal coupling that together produce precise synaptic and junctional localization.","category":"dark","control_evaluation":null,"validation_plan":null,"structure":{"source":"AlphaFold DB","pdb":"/structures/AF-Q96JB8.pdb","alphafold":"https://alphafold.ebi.ac.uk/entry/Q96JB8"},"links":{"uniprot":"https://www.uniprot.org/uniprotkb/Q96JB8/entry","atlas":"/p/Q96JB8"},"provenance":{"model":"BioReason-Pro (ESM3 esm3-sm-open-v1)","source_list":"Pharos Tdark","note":"AI prediction, not experimentally verified"}}