{"uniprot":"Q96N46","gene":"TTC14","name":"Tetratricopeptide repeat protein 14","organism":"Homo sapiens (Human)","status":"dark","length":770,"sequence":"MDRDLLRQSLNCHGSSLLSLLRSEQQDNPHFRSLLGSAAEPARGPPPQHPLQGRKEKRVDNIEIQKFISKKADLLFALSWKSDAPATSEINEDSEDHYAIMPPLEQFMEIPSMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGIKLGVISSEELPLYYRRSVELNSNSLESYENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAEDALQKLHKYMQKSLELREKQAEKEEKQKTKKIETSAEKLRKLLKEEKRLKKKRRKSTSSSSVSSADESVSSSSSSSSSGHKRHKKHKRNRSESSRSSRRHSSRASSNQIDQNRKDECYPVPANTSASFLNHKQEVEKLLGKQDRLQYEKTQIKEKDRCPLSSSSLEIPDDFGGRSEDPRDFYNSYKTQAGSSKTEKPYKSERHFSSRRNSSDSFCRNSEDKIYGYRRFEKDIEGRKEHYRRWEPGSVRHSTSPASSEYSWKSVEKYKKYAHSGSRDFSRHEQRYRLNTNQGEYEREDNYGEDIKTEVPEEDALSSKEHSESSVKKNLPQNLLNIFNQIAEFEKEKGNKSKN","function_summary":"A nucleoplasmic scaffold that binds single-stranded RNA and organizes nuclear ribonucleoprotein assemblies. Its RNA-recognition module captures transcripts destined for maturation and surveillance, while a helical repeat array recruits partner proteins to build decay and processing platforms. By coupling RNA binding with multivalent assembly, it supports histone pre-mRNA 3′-end formation and broader nuclear RNA quality control, operating in close functional proximity to the nuclear exosome.","plain_language":"TTC14 has barely been studied. The model's best guess: A nucleoplasmic scaffold that binds single-stranded RNA and organizes nuclear ribonucleoprotein assemblies. Its RNA-recognition module captures transcripts destined for maturation and surveillance, while a helical repeat array recruits partner proteins to build decay and processing platforms.","uniprot_summary":"May be involved in RNA processing or metabolism.","go_terms":{"molecular_function":[{"id":"GO:0005515","label":"protein binding"}],"biological_process":[{"id":"GO:0008335","label":"histone mRNA 3'-end processing"}],"cellular_component":[{"id":"GO:0005654","label":"nucleoplasm"},{"id":"GO:0000176","label":"nuclear exosome (RNase complex)"}]},"interpro":[{"id":"IPR012340","name":"Nucleic acid-binding, OB-fold","type":"homologous_superfamily","start":108,"end":223},{"id":"IPR011990","name":"Tetratricopeptide-like helical domain superfamily","type":"homologous_superfamily","start":296,"end":466},{"id":"IPR003029","name":"S1 domain","type":"domain","start":126,"end":208},{"id":"IPR039190","name":"Tetratricopeptide repeat protein 14","type":"family","start":1,"end":715},{"id":"IPR019734","name":"Tetratricopeptide repeat","type":"repeat","start":307,"end":340},{"id":"IPR019734","name":"Tetratricopeptide repeat","type":"repeat","start":341,"end":374},{"id":"IPR019734","name":"Tetratricopeptide repeat","type":"repeat","start":382,"end":415}],"reasoning":"I begin with the InterPro architecture. The N-terminal half contains IPR012340 (Nucleic acid-binding, OB-fold homologous superfamily, residues 108–223) that overlaps with IPR003029 (S1 domain, residues 126–208). This tandem OB/S1 arrangement creates a curved β-barrel surface that grips single-stranded nucleic acids and often serves as an RNA-recognition platform. The C-terminal half is dominated by helical repeat scaffolding: IPR011990 (Tetratricopeptide-like helical domain superfamily, residues 296–466) houses a canonical TPR array evidenced by discrete repeats IPR019734 (TPR repeat, residues 307–340; 341–374; 382–415). TPR solenoids form elongated grooves that mediate avid, multivalent protein–protein interactions and assemble ribonucleoprotein complexes. The entire polypeptide is encompassed by IPR039190 (Tetratricopeptide repeat protein 14 family, residues 1–715), anchoring the interpretation that this is a nuclear RNA-handling scaffold specialized for assembling ribonuclease modules.\n\nThis domain layout dictates molecular function. The OB/S1 core confers RNA affinity and positioning, while the TPR solenoid provides a high-capacity docking surface for partner proteins. Together, these features cause a primary activity of multivalent assembly and tethering—captured by GO:0005515 protein binding—rather than catalysis. The S1 domain’s geometry favors single-stranded RNA capture and presentation, and the TPR repeats stabilize complexes by recruiting auxiliary factors.\n\nFrom this molecular function, the biological process follows. The OB/S1 module is well-suited to chaperone and hand off RNA substrates to processing machineries. In the nucleus, histone pre-mRNA undergoes unique 3′-end formation that culminates in uridylation and subsequent surveillance. A scaffold that binds RNA and organizes decay/processing modules naturally feeds into histone mRNA 3′-end processing (GO:0008335). The same architecture that binds RNA and recruits partners also supports broader nuclear RNA quality control, explaining how this factor couples maturation with surveillance pathways.\n\nCellular location is implied by both architecture and pathway context. The absence of transmembrane segments and the presence of nuclear RNA-processing modules point to a soluble nuclear residency. The assembly role and RNA-handling motifs situate the protein in the nucleoplasm (GO:0005654), where ribonucleoprotein biogenesis and RNA surveillance occur. Moreover, the TPR scaffold is ideally configured to dock the nuclear exosome; this places the protein in functional proximity to the nuclear exosome (GO:0000176), a ribonuclease complex that executes nuclear RNA decay and processing.\n\nMechanistically, I hypothesize that the OB/S1 region captures histone pre-mRNA or other nuclear transcripts and positions them for exosome engagement. The TPR array then nucleates a ribonuclease platform by recruiting exosome core and cap subunits and associated adaptors. This assembly would transiently bind and release factors that drive histone mRNA maturation and surveillance, thereby coupling RNA binding to precise nuclear RNA processing and decay.\n\nLikely interaction partners follow from this model. The TPR solenoid should recruit nuclear exosome components and adaptors, such as the exosome core ring and its nuclear cap and cofactors. To channel histone mRNA through its maturation-to-surveillance trajectory, the scaffold plausibly associates with uridylation and processing modules that feed the exosome pathway. In the nucleoplasm, these assemblies coordinate substrate handoff from RNA-binding OB/S1 modules to the exosome machinery for final trimming or degradation.","category":"dark","control_evaluation":null,"validation_plan":null,"structure":{"source":"AlphaFold DB","pdb":"/structures/AF-Q96N46.pdb","alphafold":"https://alphafold.ebi.ac.uk/entry/Q96N46"},"links":{"uniprot":"https://www.uniprot.org/uniprotkb/Q96N46/entry","atlas":"/p/Q96N46"},"provenance":{"model":"BioReason-Pro (ESM3 esm3-sm-open-v1)","source_list":"Pharos Tdark","note":"AI prediction, not experimentally verified"}}