{"uniprot":"Q9H0I2","gene":"ENKD1","name":"Enkurin domain-containing protein 1","organism":"Homo sapiens (Human)","status":"dark","length":346,"sequence":"MCEGPSRISGPIPPDPTLCPDNYRRPTSAQGRLEGNALKLDLLTSDRALDTTAPRGPCIGPGAGEILERGQRGVGDVLLQLEGISLGPGASLKRKDPKDHEKENLRRIREIQKRFREQERSREQGQPRPLKALWRSPKYDKVESRVKAQLQEPGPASGTESAHFLRAHSRCGPGLPPPHVSSPQPTPPGPEAKEPGLGVDFIRHNARAAKRAPRRHSCSLQVLAQVLEQQRQAQEHYNATQKGHVPHYLLERRDLWRREAEARKQSQPDPAMPPGHTRMPENQRLETLTKLLQSQSQLLRELVLLPAGADSLRAQSHRAELDRKLVQVEEAIKIFSRPKVFVKMDD","function_summary":"A human cytoplasmic adaptor that concentrates at centrosomes and basal bodies to organize the microtubule cytoskeleton. By using an Enkurin-class interaction module, it binds alpha-tubulin and stabilizes microtubule arrays that position the mitotic spindle and support primary cilium formation. Its scaffold-like behavior coordinates centriole and centrosome integrity, thereby coupling cytoskeletal architecture to cell division and ciliogenesis.","plain_language":"ENKD1 has barely been studied. The model's best guess: A human cytoplasmic adaptor that concentrates at centrosomes and basal bodies to organize the microtubule cytoskeleton. By using an Enkurin-class interaction module, it binds alpha-tubulin and stabilizes microtubule arrays that position the mitotic spindle and support primary cilium formation.","uniprot_summary":"May be involved in microtubule organization.","go_terms":{"molecular_function":[{"id":"GO:0043014","label":"alpha-tubulin binding"},{"id":"GO:0008017","label":"microtubule binding"}],"biological_process":[{"id":"GO:0000226","label":"microtubule cytoskeleton organization"},{"id":"GO:0000132","label":"establishment of mitotic spindle orientation"},{"id":"GO:1905515","label":"non-motile cilium assembly"}],"cellular_component":[{"id":"GO:0036064","label":"ciliary basal body"},{"id":"GO:0005814","label":"centriole"},{"id":"GO:0005881","label":"cytoplasmic microtubule"},{"id":"GO:0005813","label":"centrosome"}]},"interpro":[{"id":"IPR027012","name":"Enkurin domain","type":"domain","start":243,"end":343},{"id":"IPR052102","name":"Enkurin/enkurin domain-containing protein 1","type":"family","start":53,"end":345}],"reasoning":"I begin with the InterPro architecture. The polypeptide carries IPR027012 (Enkurin domain, residues 243–343) positioned toward the C-terminus, embedded within a broader family signature IPR052102 (Enkurin/enkurin domain-containing protein 1 family, residues 53–345). This layout—an Enkurin-class interaction module nested in a lineage-specific scaffold—implies a non-enzymatic adaptor that organizes cytoskeletal and membrane-proximal assemblies. The C-terminal Enkurin domain is known to mediate selective protein–protein and cytoskeletal contacts; its placement downstream of an extended family region suggests that N- to mid-region segments provide flexible scaffolding while the C-terminal domain confers high-affinity docking to cytoskeletal elements and centrosomal/ciliary structures.\n\nFrom this architecture, the molecular function resolves as direct cytoskeletal engagement. The Enkurin domain provides a binding surface that causes alpha-tubulin recognition and lattice association, matching GO:0043014 alpha-tubulin binding and GO:0008017 microtubule binding. Such binding is not merely passive: an Enkurin-centered scaffold can stabilize microtubule arrays and couple them to centrosomal cores.\n\nThese molecular activities drive higher-order processes. By anchoring and organizing microtubules, the protein supports GO:0000226 microtubule cytoskeleton organization. In dividing cells, this same microtubule control translates into spindle positioning; thus the adaptor’s centrosomal and microtubule-binding activities causally produce GO:0000132 establishment of mitotic spindle orientation. In differentiated cells, the same cytoskeletal toolkit is repurposed at the primary cilium. Localization of Enkurin-domain scaffolds to the basal body and centriole provides a platform for axoneme initiation and membrane–cytoskeleton coupling, thereby enabling GO:1905515 non-motile cilium assembly.\n\nCellular location follows directly from these roles. The Enkurin-domain scaffold concentrates at microtubule-organizing centers and ciliary structures, explaining occupancy of GO:0005813 centrosome and GO:0005814 centriole, and aligning with the ciliary basal body (GO:0036064). Its soluble, adaptor-like nature and microtubule engagement place it broadly in the cytoplasm and along cytoplasmic microtubules (GO:0005881). This distribution coheres with observed enrichment at centrosomes and basal bodies and with a cytoplasmic/cytoskeletal residency.\n\nMechanistically, I hypothesize that the Enkurin domain nucleates a multi-protein assembly that bridges alpha-tubulin lattices to centrosomal and basal-body matrices. By recruiting centriole and pericentriolar components, the scaffold stabilizes microtubule minus ends and positions the mitotic spindle. In ciliated cells, the same adaptor likely captures membrane–cytoskeleton linkers at the basal body to seed the primary cilium. Likely partners include alpha-tubulin and gamma-tubulin ring complex elements for lattice nucleation; centrosomal organizers such as CEP proteins and PCM1 for centriole–centrosome integrity; and ciliary initiation factors like CEP97 and IFT adaptors. Together, these interactions explain how a human Enkurin-domain scaffold coordinates microtubule architecture, spindle orientation, and non-motile cilium assembly from a cytoplasmic, centrosome/basal-body–proximal locale.","category":"dark","control_evaluation":null,"validation_plan":null,"structure":{"source":"AlphaFold DB","pdb":"/structures/AF-Q9H0I2.pdb","alphafold":"https://alphafold.ebi.ac.uk/entry/Q9H0I2"},"links":{"uniprot":"https://www.uniprot.org/uniprotkb/Q9H0I2/entry","atlas":"/p/Q9H0I2"},"provenance":{"model":"BioReason-Pro (ESM3 esm3-sm-open-v1)","source_list":"Pharos Tdark","note":"AI prediction, not experimentally verified"}}