Proteins / PCDHGA8
PCDHGA8
Protocadherin gamma-A8
Predicted 3D structure
AlphaFold model.
In plain language
PCDHGA8 has barely been studied. The model's best guess: A single-pass cell-surface adhesion receptor that uses a multi-repeat cadherin ectodomain to form calcium-stabilized adhesive bonds between neighboring cells and a cytoplasmic tail that recruits catenins to couple adhesion to the actin cytoskeleton. By assembling adhesive and signaling complexes at the plasma membrane, it organizes and stabilizes neuronal contacts, promoting synapse assembly and sustaining chemical synaptic transmission through coordinated adhesion and cytoskeletal coupling.
A single-pass cell-surface adhesion receptor that uses a multi-repeat cadherin ectodomain to form calcium-stabilized adhesive bonds between neighboring cells and a cytoplasmic tail that recruits catenins to couple adhesion to the actin cytoskeleton.
Confidence: the model gives no confidence score, and this protein has no known function to compare with. Treat it as a hypothesis.
Protein domains
Known building blocks found by InterPro, placed along the 932 amino acids of the chain. Hover or tap a block for details.
- Cadherin-like superfamily · 29–115
- Cadherin-like superfamily · 127–234
- Cadherin-like superfamily · 230–346
- Cadherin-like superfamily · 340–444
- Cadherin-like superfamily · 441–565
- Cadherin-like superfamily · 556–666
- Cadherin-like · 19–133
- Cadherin, N-terminal · 30–112
- Cadherin-like · 134–242
- Cadherin-like · 242–347
- Cadherin-like · 356–562
- Cadherin-like · 579–682
- Cadherin, cytoplasmic C-terminal domain · 688–772
- Cadherin, C-terminal catenin-binding domain · 811–932
- Cadherin conserved site · 230–240
- Cadherin conserved site · 440–450
- Cadherin conserved site · 550–560
Predicted function
Model summary
A single-pass cell-surface adhesion receptor that uses a multi-repeat cadherin ectodomain to form calcium-stabilized adhesive bonds between neighboring cells and a cytoplasmic tail that recruits catenins to couple adhesion to the actin cytoskeleton. By assembling adhesive and signaling complexes at the plasma membrane, it organizes and stabilizes neuronal contacts, promoting synapse assembly and sustaining chemical synaptic transmission through coordinated adhesion and cytoskeletal coupling.
Predicted Gene Ontology terms
Biological process
Which larger process it takes part in
- GO:0007416 synapse assembly
- GO:0007268 chemical synaptic transmission
Model reasoning
How the model got to its answer
- 01
I begin by dissecting the InterPro architecture, which is dominated by tandem cadherin modules followed by a cytoplasmic tail specialized for cytoskeletal coupling.
The extracellular region is built from multiple cadherin-like repeats: IPR015919 (Cadherin-like superfamily) spans residues 29–115, 127–234, 230–346, 340–444, and 441–565, and 556–666, with finer annotation by IPR002126 (Cadherin-like domain) at 19–133, 134–242, 242–347, 356–562, and 579–682. The N-terminal adhesive core is reinforced by IPR013164 (Cadherin, N-terminal domain) at 30–112, and two conserved calcium-binding/structural motifs—IPR020894 Cadherin conserved sites at 230–240 and 440–450—mark canonical cadherin repeats that rigidify the ectodomain in the presence of Ca2+. This extracellular array is followed by IPR032455 (Cadherin, cytoplasmic C-terminal domain, 688–772) and IPR031904 (Cadherin, C-terminal catenin-binding domain, 811–932), which together specify a cytosolic tail that recruits catenins and anchors the complex to the actin cytoskeleton. The ordered layout—N-terminal cadherin repeats for adhesion and Ca2+-stabilized ectodomains, a single-pass membrane anchor (implied between the extracellular and cytosolic regions), and a catenin-binding cytoplasmic tail—defines a classical cadherin architecture that causes high-avidity cell–cell adhesion and intracellular signal transduction.
- 02
This modular arrangement dictates molecular function.
The tandem cadherin-like domains (IPR002126; IPR015919) create a rigid, Ca2+-stabilized adhesive surface that mediates homophilic and heterophilic binding between opposing cell membranes. The cytoplasmic C-terminal catenin-binding region (IPR031904) drives assembly of intracellular complexes that tune adhesion strength and signaling. Together, these features enforce multivalent protein–protein interactions rather than catalysis, aligning with GO:0005515 protein binding as the operative molecular function.
- 03
From function to process, cadherin-mediated adhesion is a primary organizer of tissue architecture and neuronal connectivity.
The adhesive ectodomain and catenin-coupled tail coordinate synapse initiation and stabilization, which mechanistically supports GO:0007416 synapse assembly. By stabilizing synaptic contacts and coupling to actin remodeling, the complex sustains vesicle tethering and receptor clustering, thereby supporting GO:0007268 chemical synaptic transmission. These processes are emergent properties of cadherin-driven adhesion and cytoskeletal coupling.
- 04
Cellular location follows directly from the architecture.
The presence of a single-pass membrane topology with a large extracellular cadherin array and a cytosolic catenin-binding tail places the protein at the cell surface, consistent with GO:0005886 plasma membrane. The extracellular repeats face the intercellular space to engage neighboring cells, while the cytoplasmic tail interfaces with cortical actin.
- 05
Mechanistically, the protein likely forms trans-adhesive bonds via its cadherin ectodomains and cis-clusters within membrane microdomains.
Calcium binding at the conserved cadherin sites rigidifies the ectodomain, increasing avidity and specificity of adhesion. The cytoplasmic tail recruits catenins (beta-catenin and p120-catenin) and alpha-catenin, which bridge to F-actin and mechanotransduction hubs. I therefore hypothesize interactions with catenins (CTNNB1, CTNND1, CTNNA isoforms), actin (ACTB/ACTG1), and synaptic scaffolds that assemble at cadherin-rich junctions. In neurons, these assemblies nucleate and stabilize synaptic contacts, coupling adhesion to synaptic assembly and neurotransmission.
Technical details
InterPro entries
- IPR015919 Cadherin-like superfamily homologous superfamily · 29–115
- IPR015919 Cadherin-like superfamily homologous superfamily · 127–234
- IPR015919 Cadherin-like superfamily homologous superfamily · 230–346
- IPR015919 Cadherin-like superfamily homologous superfamily · 340–444
- IPR015919 Cadherin-like superfamily homologous superfamily · 441–565
- IPR015919 Cadherin-like superfamily homologous superfamily · 556–666
- IPR002126 Cadherin-like domain · 19–133
- IPR013164 Cadherin, N-terminal domain · 30–112
- IPR002126 Cadherin-like domain · 134–242
- IPR002126 Cadherin-like domain · 242–347
- IPR002126 Cadherin-like domain · 356–562
- IPR002126 Cadherin-like domain · 579–682
- IPR032455 Cadherin, cytoplasmic C-terminal domain domain · 688–772
- IPR031904 Cadherin, C-terminal catenin-binding domain domain · 811–932
- IPR020894 Cadherin conserved site conserved site · 230–240
- IPR020894 Cadherin conserved site conserved site · 440–450
- IPR020894 Cadherin conserved site conserved site · 550–560
Sources
- Sequence: UniProt Q9Y5G5
- Structure: AlphaFold DB (PDB file)
- Domains: InterPro
- Dark protein list: Pharos (Tdark)
Method
BioReason-Pro with the ESM3 protein language model (esm3-sm-open-v1). How the atlas is made →