Proteins / LCE2D
LCE2D
Late cornified envelope protein 2D
Predicted 3D structure
AlphaFold model.
In plain language
LCE2D has barely been studied. The model's best guess: A human late cornified envelope precursor that operates as a soluble, binding-competent scaffold during terminal differentiation of keratinocytes. It accumulates in the cytosol of epidermal cells before becoming cross-linked into the insoluble cornified envelope, where it helps fortify the skin barrier.
A human late cornified envelope precursor that operates as a soluble, binding-competent scaffold during terminal differentiation of keratinocytes.
Confidence: the model gives no confidence score, and this protein has no known function to compare with. Treat it as a hypothesis.
Protein domains
Known building blocks found by InterPro, placed along the 110 amino acids of the chain. Hover or tap a block for details.
- Late cornified envelope protein · 25–110
Predicted function
Model summary
A human late cornified envelope precursor that operates as a soluble, binding-competent scaffold during terminal differentiation of keratinocytes. It accumulates in the cytosol of epidermal cells before becoming cross-linked into the insoluble cornified envelope, where it helps fortify the skin barrier. Its assembly behavior is driven by multivalent protein interactions that are tuned by calcium-responsive differentiation pathways. By stabilizing envelope formation in the upper layers of the skin, it supports barrier integrity and indirectly influences neural and systemic physiology through epidermal–neuronal signaling crosstalk.
Predicted Gene Ontology terms
Biological process
Which larger process it takes part in
- GO:0050890 cognition
- GO:0071277 cellular response to calcium ion
Model reasoning
How the model got to its answer
- 01
I begin with the InterPro architecture: a single annotated region, IPR028205 (Late cornified envelope protein family) spanning residues 25–110.
This family signature defines a class of small, low-complexity structural precursors of the cornified envelope. Their hallmark is a propensity to become covalently cross-linked into the terminally differentiated keratinocyte scaffold during epidermal maturation. The N-terminal segment preceding residue 25 and the short C-terminal tail outside the family core typically provide flexible, intrinsically disordered regions that mediate multivalent contacts with other envelope components and keratins. This architecture favors extensive protein–protein association rather than catalysis, directly supporting GO:0005515 protein binding as the primary molecular function.
- 02
From this binding-centric scaffold, I infer the biological role.
Late envelope precursors are installed as keratinocytes exit the epidermal progenitor state and undergo terminal differentiation. Calcium-triggered differentiation programs drive envelope assembly; thus the protein’s binding-driven assembly behavior naturally participates in pathways that respond to calcium signals, aligning with GO:0071277 cellular response to calcium ion. The same structural logic explains why the protein is tied to higher-order organismal outcomes: epidermal integrity and barrier function feed into neural and systemic physiology. Perturbations in skin barrier signaling and neurotransmitter/catecholamine handling can propagate to brain circuits and systemic homeostasis, providing a mechanistic bridge to GO:0050890 cognition and a plausible route by which envelope-maturation factors influence cognitive pathways indirectly through neuroepidermal crosstalk and stress-axis modulation.
- 03
Cellular placement follows from the assembly route.
Before cross-linking, envelope precursors are soluble and accumulate in the cytosol of differentiating keratinocytes, consistent with GO:0005829 cytosol. As things mature, they become immobilized within an insoluble shell beneath the plasma membrane; however, the soluble phase precedes and enables their assembly, and cytosolic residence is therefore a necessary stage in their life cycle.
- 04
Mechanistically, the late envelope family architecture causes multivalent, transient binding that nucleates supramolecular assemblies.
Calcium elevation induces keratin filament bundling and recruits transglutaminase-driven cross-linking chemistry; this protein likely binds keratin intermediate filaments and envelope scaffold proteins, positioning it for subsequent covalent capture. I therefore hypothesize interactions with keratin pairs characteristic of upper epidermal layers and with envelope constituents such as loricrin and involucrin, as well as calcium-responsive adaptors. Through these assemblies, the protein stabilizes the maturing envelope, couples calcium-responsive differentiation to barrier formation, and indirectly influences neural and systemic physiology via epidermal–neuronal signaling axes.
Technical details
InterPro entries
- IPR028205 Late cornified envelope protein family · 25–110
Sources
- Sequence: UniProt Q5TA82
- Structure: AlphaFold DB (PDB file)
- Domains: InterPro
- Dark protein list: Pharos (Tdark)
Method
BioReason-Pro with the ESM3 protein language model (esm3-sm-open-v1). How the atlas is made →